Sunday, December 9, 2012
Sunday Spinelessness - A Clearwing moth
I'm helping design an undergraduate lab on systematics and taxonomy at the moment. Since the new lab is about insects I've suddenly become very aware of the traits that distinguish various insect groups. Moths, along with butterflies, make up the order Lepidoptera. You can see a few lepitoperan characters in the above photo: a mouth designed for siphoning nectar from flowers and a body covered in fine scales.
"Lepitoptera" actually mans "scaley wing", and, indeed most butterflies and moths have scales on their wings. This species, though, has got rid of most of it's wing scales (there are plenty of scales on the trialing edge though):
Labels: environment and ecology, lepidoptera, moths, photo, sci-blogs, sesiidae, sunday spinelessness, Synanthedon tipuliformis
Sunday, December 2, 2012
Sunday Spinelessness - Bark Lice
As Ted and Morgan worked out, these are "bark lice", members of the order Psocoptera. Although they are related to the "true lice" (Order Phthiraptera), psocopterans are not parasites. Rather, they wander around their trees eating algae, fungi and whatever detritus might be clinging to the bark. The only species that could be considered pests are the "book lice" - small flightless psocopterans that sometimes turn up in old books where they eat the paste that binds pages together. (I have it on good authority that book lice can also destroy botanical collections, so certainly a pest)
A couple of weeks ago I gave Veronika Meduna a tour of our garden and its bugs, and I gather you can hear the result on Radio New Zealand's Our Changing World next week. While I was catching my breath between talking about the mating habits of spiders, and how our native slugs are much more sluggish then their introduced counterparts she asked the obvious question - "why?". Why do I care so much about odd little creatures like bark lice and slugs and spiders? I'm not sure I managed a coherent answer at the time, but I can tell you now, spineless creatures need evangelists because most people have a very skewed view about the way biology works. If your vision of biodiversity is limited to pandas and dolphins and lions and tigers then you are missing out on millions of other ways to be alive.
Take bark lice as an example. I'll admit that I'd never given these creatures a moments thought before running into them last week. But, in researching this post I found out there are more than four thousand psocopteran species. That is to say, there are almost as many bark lice species as there are mammals - all the lions, tigers, bears, dolphins, whales, marsupials, rodents and bats in the world add up to about 5 400. That matters because species are the fundamental units of biological diversity. Each species represents a distinct evolutionary lineage - free to take up different ecological niches, develop new morphological features or occupy a different geographic range.
To try an illustrate how diverse these unassuming little critters really are, I've put together a "treemap". In the plot below, each of the stained-glass window panels represents the number of species in one psocopteran genus, nested within a family (the heavier lines, with labels ending in -DAE) which in turn is nested within a suborder (the very heaviest lines, labeled -MORPHA). These higher taxonomic ranks are not fundamental units in the way species are. Even so, species placed within a taxonomic group share evolutionary history, and are united by particular morphological characters which they share. It turns out there are quite a few ways to be a bark louse:
For me, this chart is the best answer to "why?". How can you know you share the world with all this extraordinary diversity and not want to want to spend your time working out how it got here?
*This is not a botany blog... I really have no idea what the tree is
Labels: bark lice, environment and ecology, psocoptera, sci-blogs, sunday spinelessness
Sunday, November 25, 2012
Sunday Spinelessness - An ID challenge
Labels: environment and ecology, mystery, photos, sci-blogs, sunday spinelessness
Sunday, November 18, 2012
Sunday Spinelessness - Shocked from sloth by a beautiful spider
But I was shocked from my sloth this afternoon when I passed that accursed agapanthus and saw a spider I really had to share with the world:
It's an orb-weaving (araneid) spider, a relative of the familiar garden spiders like the very common Eriophora pustulosa that spin orb-shaped webs and catch unlucky flying insects. I can't be sure on the identification of this one, but I reckon (with some support from twitter's resided spider experts, [1], [2]) its a species a species of Novaranea. According to Ray and Lyn Foster's Big Spider Book New Zealand Novaranea species are most commonly encountered in in grasslands and tussocks, so perhaps this one blew in from the tall grass that covers some the abandoned gardens in our block.
However it made it our garden, I'm very happy to have encountered a such a neat looking spider, and even done a half-decent job capturing some of its beauty:
Labels: environment and ecology, photos, sci-blogs, sunday spinelessness
Tuesday, September 25, 2012
All the media!
So, things have been a little quite here lately. That wasn't a plan to have me an that ridiculous hat up on the front page for a few weeks - just the result of having little spare time. As it turns out, a few things that might be of interest to readers here have been published over that fallow period, here's the links:
- I'm in a book! As I related last year, my post on the partulids land snails of Society Isalnds was selected for The Best Science Writing Online which is now available from all good book sellers. I'm ridiculously excited by this. There is also a short review in The Listener
- My latest little piece for stuff.co.nz deals with Colin Craig and his idea that research tells us sexual orientation is a choice, and that this is relevant to marriage equality.
- I was on the radio - an hour of talking about science, peer review and skepticsm on Radio One, the student radio station.
I guess to complete the set I'd need to make a TV appearance, though I can't see that happening!
*For people with whom I've had exactly this conversation lately - it's true, I have been busy, I am a terribly friend and we will catch up soon!
Labels: blog blogging, sci-blogs
Tuesday, August 28, 2012
Graduation, nerd blogging and a talk
I've also been working a little on some more software for evolutionary biology. Since I very much aim this blog at a lay-level, and there is no reason on earth why a lay-person ought to care about the computer programs scientists use to collect and analyse their data, I've decided to set up a dedicated nerd blog. The first post their introduces an R library that can help researchers quickly download data from molecular biology and medical databases.
Finally, I should say their probably won't be a new post here this weekend either, as I'll be at the New Zealand Skeptics Conference, right here in Dunedin. I'll be giving a talk about how the the creation-evolution "debate" as it usually plays out has very little to do with evolutionary biology, and how getting past popular misconceptions about the way evolution works makes most creationist objections to evolution into non-starters. I'll also say why I think good old fashioned creationism is a more respectable position than "intelligent design", so that ought to be fun. If you're in Dunedin you can still register for the whole meeting, my talk is on at 9:50am on Saturday in Archway 3 (the best, and perhaps only, way to find this lecture theatre is to walk into the Archway building and wander around opening doors at random).
Labels: blog blogging, sci-blogs
Thursday, August 9, 2012
Measuring population differentiation in R
Biologists often want to be able to measure the degree to which a population is divided into smaller sub-populations. This can be an important thing to quantify, because sub-populations within highly structured populations are, to some extent, genetically distinct from other sub-populations and therefore have their own evolutionary histories (and perhaps futures).
To illustrate this point I've run some simulations. Imagine if we had 5 subpopulations, each with a thousand individuals. In each population we will follow the fate of a locus with two alleles, R and r that have no effect on survival or reproduction and start with frequencies 0.8 and 0.2 respectively (these numbers motivated by this post). In the absence of gene flow between these populations (Panel 1) the frequency of the r allele bounces around due to genetetic drift (evolutionary change, after all, is inevitable). Crucially though, changes in one population can't effect other populations so we end up with substantial among-population differences in allele frequency. In the next two panels, in each generation a proportion of each population's individuals (0.001 and 0.01 respectively) are drawn from the other populations in the simulation. Now that the populations are sharing genes the lines that represent their allele frequencies pull together (that is, the among-population variation is reduced).
One way to quantify the among-population variation displayed in these simulations is to look at the number of heterozygotes you expect to observe across the entire population. The final values for P(r) in the first simulation were {0.33, 0.47. 0.88. 0.10. 0.33} with a mean frequency of 0.42 (so the frequency of the R allele would be 0.58). Knowing our Hardy Weinberg, if we had one big population with two alleles, one being at a frequency of 0.42 we'd expect to get 2pq = 2 * 0.42 * 0.58 = 0.40 heterozygotes. We can call that number HT for expected total heterozygosity. But thats not what we'd actually see in this case. The sub-populations that make up this larger population have their own allele frequencies, when we calculate the expected proportion of heterozygotes for each of these populations by themselves we end up with {0.44, 0.49, 0.21, 0.18, 0.44} for a within-population expected heterozygosity (HS) of 0.35*. This lack of heterozygotes within sub-populations compared with the total population expectation will always arise when genetic drift makes sub-populations distinct from each other. Masatoshi Nei used this pattern to propose a statistic to quantify population divergence called GST, which he defined like this:
Although the problem of GST's dependence on HS has been known for a while, it's taken some time for new statistics that get around this problem to be developed. Philip Hedrick (doi: 10.1554/05-076.1) along with Patrick Meirmans (doi: 10.1111/j.1755-0998.2010.02927.x) introduced G''ST - a version of GST that is corrected for the observed value of HS as well as the number of sub-populations being considered. Meirmans used a similar trick to define φ'ST (doi: 10.1111/j.0014-3820.2006.tb01874.x), another FST analogue that partitions genetic distances into within- and between-population components. Most recently, Lou Joust introduced an entirely separate statistic, D, that directly measures allelic divergence (doi 10.1111/j.1365-294X.2008.03887.x).
The statistical programming language R is becoming increasingly popular among biologists. Although there is a strong suite of tools for performing population genetic analyses in R, code to calculate these "new" measures of population divergence have not been available. My package, mmod, fills this gap. I won't give too many details of the package here, as that's detailed in the paper and the package is will documented. Briefly, mmod has functions to calculate the three statistics described above (and Nei's GST ), as well as pairwise versions of each statistic for every population in a datastet. It also allows users to perform bootstrap and jacknife re-sampling of datasets, the results of which are returned as user-accessable objects which can be examined with any R function (there is also a helper function to easily apply differentiation statistics to bootstrap sample and summarise the results) . The library is on CRAN, so installation is as easy as typing "install.pacakge("mmod")", the source code is up on github. If want to use the package I'd suggest reading the vignette ("mmod-demo") before you dive in.
I'm keen to hear about bugs or feature requests from users, just email them to david.winter@gmail.com
Reference:
Winter, D.J. (in press). MMOD: an R library for the calculation of population differentiation statisticsMolecular Ecology Resources : dx.doi.org/10.1111/j.1755-0998.2012.03174.x
Labels: my research, population genetics, sci-blogs, science
Sunday, August 5, 2012
Sunday Spinelessness - How snails conquered the land (again and again)
Almost all the land snails I've talked about here at The Atavism are descendants from just one invasion of the land. We call these species the stylommatophorans and you can tell them from other landlubber-snails because they have eyes on stalks (as modeled here by Thalassohelix igniflua):
I did warn you that it was a crumby drawing. In life G. purchasi have an orange-red sort of a hue, and you can often see patches of pigment from the animal through the shell. Georissa species are from the family Hydrocenidae and are quite closely related to a group of predominantly freshwater snails called nerites. Just like the other lineages discussed, the Hydrocenidae have given up their gills and breathe through a vasculated mantle cavity. Very little is known about the biology of these snails. G. purchasi is sometimes said to be limited to very wet conditions, but I've collected (inactive) specimens form the back of fern fronds well above ground so it can't be completely allergic to dry .
Most of the description of Cyclophoroids here is taken from:
Barker, GM (2001) Gastropods on land: phylogeny, diversity and adaptive morphology In Barker (Ed.), The biology of terrestrial molluscs (pp 1—146) CABI Publishing.
Labels: molluscs, native snails, photos, sci-blogs, science, sunday spinelessness
Sunday, July 29, 2012
Sunday Spinelessness - Hairy snails
Labels: molluscs, native snails, new zealand, sci-blogs, science, sunday spinelessness
Sunday, July 22, 2012
Sunday Spinelessness - New Zealand microsnails
The local land snail fauna displays a pattern that is quite common for New Zealand animals - we have a very large number of species but those species are drawn from relatively few taxonomic families. Since taxonomic groups reflect the evolutionary history of the species they contain, that pattern most likely arises because New Zealand is (a) quite hard to get to, so few would-be colonists make it here and (b) full of ecological niches and geographic pockets that can drive the formation of new species. In total, there are are probably about 1200 native land snail species in New Zealand - about ten times the number found in Great Britain, which is approximately the same size. That diversity extends to the finest scales - individual sites in native forest might have as many as 60 species sharing the habitat. New Zealand forests probably have the most diverse land snails assemblages in the world (although tropical ecologists, who generally hold that diversity in terrestrial habitats almost invariably increases as you approach the equator, have argued against this conclusion).
You may now be asking why, if this land snail fauna is so diverse, have you never seen a native snail. Well, you've probably walked past thousands of them without noticing. Most of our native land snail species are from the families Punctidae and Charopidae, groups that are sometimes given the common name "dot snails". Meembers of these families are usually smaller than 5 mm across the shell, and are restricted to native forest and in particular to leaf litter. But in native forests, where there's leaf litter there's snails. Grab a handful of leaves, or pull up a log and you're likely to find a few tiny flat-spired snails going about their business. Hell, down here in Dunedin you can even find charopids living under tree-fuschia in a suburban garden.
Like so many native invertebrates, we know very little about our land snails. Lots of people have dedicated substantial parts of their lives to documenting and describing the diversity of these creatures, but even so we don't have a clear understanding of how the native species relate to each other or to their relatives in the rest of the world, or even where one species starts and another ends. Without such a basic understanding, its very hard to ask evolutionary and ecological questions about these species, so for now we remain largely ignorant of the forces that have created the New Zealand land snail fauna.
For the time being I can tell you that a lot of them are really quite beautiful. Since most people don't have handy access to a microscope to see these critters, I thought I would share a few photos from this largely neglected group over the next few weeks. The 2D photographs, with the relatively fine depth of field, don't quite record the beauty of these 3D shells, but I hope it's at least a window into the diversity of these snails.
Let's start with a snail that is very common in Dunedin parks and forests. This is a species from the genus Cavellia (the strong, sine-shaped ribs being the giveaway) but I won't be able to place it to species until a new review of that genus is published.
This particular shell is from an immature specimen, and is about 2mm across. When flipped, you can see an open umbilicus that lets you see straight through to the apex of the shell.
Labels: molluscs, native snails, photos, sci-blogs, snails, sunday spinelessness
Wednesday, July 11, 2012
You can't ban redheaded sperm
It seems quite a few students have planned their high school and unversity careers in the hope that studying biology meant that could leave maths behind. So, when they are confronted with "p2 + 2pq + q2 = 1" and asked to do something with it, they are unhappy.
That particular formula is for something called the Hardy-Weinberg equilibrium and a significant proportion of students roll their eyes and slump their shoulders when you tell them they are going to need to use it for a problem. They think its arbitrary and irrelevant to anything the least bit important, and what's more it looks a little like it's already solved. So, I'm always looking for ways to convince people that Hardy-Weingberg isn't just simple, but actually intuitive and important. So here's my attempt to explain why knowing a little population genetics is helpful.
You may remember last year a Danish sperm bank had started turning away would-be donors with red hair, since there is little demand for sperm that might contribute to the creation of a readhead. It turns out, if you know a little bit about population genetics you can see that policy will have little effect on the number of red heads the sperm bank helps to bring into the world.
Hair colour is partially controlled by a gene called MC1R. There are different versions of MC1R floating around in human populations, and one of them has a mutation that stops melanin (a dark pigment) passing into hairs as they grow. Geneticists call different versions of a gene "alleles", so we'll call this flavour of MC1R the "red hair allele" and give it the symbol r.As I'm sure you know, you have two copies of most of your genes, one inherited from your mother and the other from your father. Red hair is a recessive trait, which means in order to have red hair both of your copies of MC1R need to be the r allele: if you have one or two copies of the "normal" MC1R allele (which we'll call "R") you have some pigment passing into your hair and it will be another colour. We call the total genetic make-up of a person their "genotype", and their physical characteristics their "phenotype", so here's a table showing the genotypes and the phenotypes we're talking about in this post:
Genotype |
r/r
|
r/R
|
R/R
|
Phenotype (hair colour)
|
Red Hair
| Not Red Hair | Not Red Hair |
I know there are a lot of technical terms there (Carl Zimmer will not be happy...), but we do need to be precise when we talk about genetics because, strange as it may seem, there isn't a single definition of the word gene. Once you've got your head around the terms, it's all pretty straight forward: you need two copies of the r allele to have red hair. Think what this means for the Danish sperm bank though. Turning away red headed sperm donors doesn't turn away red headed sperm since there will still be "carriers" with only one copy of r (and, thus, non-red hair) donating sperm and half of those sperm will be "red headed sperm".
How big a problem is this likely to be? First we need to work how common the r allele is, and we can use the frequency of redheads to find that. By long tradition, the frequency of a recessive allele is denoted by "q", so, in a population where one quarter of the alleles are r we'd say q = 0.25. We know that in order to have red hair you need both your copies of the MC1R gene to be the r allele and that you inherit each allele separately. When probabilities are independant we can mutiply them, so the chace someone in this population is a redhead is q x q = q2 = 0.06 .Following the same logic, the frequency of the R/R genotype must be the frequency of R squared (by convention, the frequency of a dominant allele is called "p", so that's p2).
Knowing this relationship, we can work backwards and find the frequency of r if we know the proportion of redheads in a population. In most of Northern Europe, about 4% (0.04) of the populaiton are redheads so q2 = 0.04 and q = √0.04 = 0.2. As you can see, red hair genes can be a lot more common than redheads:
It's easy to calculate how the policy would work in populations with more or less redheads:
A lot of rare diseases are caused by recessive alleles. They remain rare for the obvious reason that people with such diseases are unlikely to pass on their genes. But they remain present in populations because, as we've found, once recessive alleles get rare the overwhelming majority of them are found in carriers. In this way, rare recessive alleles are seldom exposed to selection so they stick around for a long time.*
Because disease causing genes stick around in populations, there is a pretty good chance that you carry a few alleles that would cause a debilitating disease in someone who had two copies of them. The same applies to anyone you might be hoping to have children with. Thankfully, its very unlikely that your prospective mate with have disease-causing alleles for the same genes that you do. That is, as long as you look beyond the family tree when you look for a mate. If you have a child with someone who is closely related to you, you will have each inherited some of your genes from the same source, which increases the chances you share disease alleles.
*In fact, they often reach a point called "mutation-selection balance" in which the frequency of the allele remains static because new mutations re-create the allele as quickly as selection removes it. JBS Haldane was the first person to notice this, and he used his theory to create a very accurate estimate of the human mutation rate well before we knew what genes were made of!
Labels: genetics, population genetics, sci-blogs, science, teaching
Sunday, July 8, 2012
Sunday Spinelessness - Cuttlefish in drag deceive their rivals
Cuttlefish are relatively small (the largest grow to 50cm) squid-like cephalopods that present a nice soft and digestible meal to predatory fish and marine mammals. Having lost the shell that most molluscs use to protect themselves cuttlefish have had to develop other defences. Most strikingly, cuttlefish are masters of camouflage
Just this week, researchers have reported evidence for a other trick that cuttlefish can pull off. When males of the Austrian Mourning Cuttlefish (Sepia plangon) see a female they put on a show, producing striped patterns that evidently impress the female. But these animals form male-dominated groups, and rival males often interrupt would-be woo-ers in mid-display. So, when they spy a receptive female, males want to put on their flamboyant show for her to judge, but also want to make sure they don't attract the attention of rival males that might want to spoil the party. The male Mourning Cuttlefish's answer to this problem? Using only half of his body to put on the female-impressing show, and throwing would-be spoilers off the scent by mimicking a female with the other half.
This gender-splitting tactic seems to be pretty common. In aquarium experiments about 40% of males would attempt the deceptive signal when they were displaying in the presence of a rival. Just as the cuttlefish camouflage response requires information from the physical environment, the gender-splitting trick is influenced by what the male can learn of the social environment. If more than one female is available the male will display to both without bothering to hide his intentions for observers (probably because working out an angle from which he could excite two females while staying under the radar is just not possible). Likewise, if more than one rival male is about that don't bother with the deception - since it wouldn't be possible to maintain the illusion for two rivals viewing from different positions.
Brown, Garwood & Williamson (In press) It pays to cheat: tactical deception in a cephalopod social signalling system. Biology Letters. http://dx.doi.org/10.1098/rsbl.2012.0435w
Labels: cephalopods, molluscs, sci-blogs, science, sunday spinelessness
Sunday, July 1, 2012
Sunday Spinelessness - The other mollusc shell
You can watch this remarkable behaviour here:
I don't want to talk too much more about the purpose of the argonaut shell, partly because it has already been well covered. Ed Yong wrote a predicably clear and interesting post on the research which uncovered it (which also produced an interesting comments thread) and the lead researcher, Julian Finn from Museum Victoria in Australia, also discussed his work in a really great video.
Instead, I want to talk about the origin of the argonaut shell. Octopuses are molluscs, part of a group of soft-bodied animals that includes clams and mussels and snails. Most molluscs have shells. In fact, despite being arugably the most morphologically diverse of the 35 animal phyla, only a few small groups of molluscs don't contain at least some species that produce shells. The easiest way to explain the presence of shells in so many different molluscan groups is to hypothesize that the last common ancestor of all molluscs had a shell, and most of that ur-mollsuc's descendants have retained this organ.
In evolutionary biology we call traits that are shared between organisms as a result of their shared evolutionary history "homologies". Homologous traits are often compared with "analgous" ones, parts of organisms that are similar as the result of independent innovations in different evolutionary lineages. We can illustrate the concept using a bat's wing as an example. The forelimbs of bats and whale are made up of the same bones, despite the fact that whales swim and bats fly. That's because bats and whales are both mammals, and they inherited their forelimb bones from a common ancestor before each group radically repurposed their limbs. On the other hand, despite the fact that both bats and stoneflies fly, the insect wing and the bat wing are separate evolutionary inventions and not something the two groups share as a result of shared evolutionary history:
Labels: argonauts, cephalopods, molluscs, sci-blogs, sunday spinelessness
Sunday, June 17, 2012
Sunday Spineless - How some snails became red-blooded
The ghost Powelliphanta is a pretty cool snail, but there's actually an albino snail that's even more interesting. Every now and again a truly albino individual of the freshwater snail Biomphalaria glabrata pops up. Looking at these mutants we can learn something about the evolutionary history of the these snails:
Free from the pigments that would usually make shell opaque we can see the feature that sets Biomphalaria and other species form the family Planorbidae (ramshorn snails) apart from every other snail. The planorbids are the only red-blooded snails on earth. So why are these snails so different?
As we all know, in order to live animals need to get oxygen from their environment into their bodies. For small animals this doesn't represent a huge problem. Oxygen will flow form areas of high partial pressure (a concept analgous to concentration, but accounting for some of the weird ways gasses behave) to areas in which Oxygen is being used up. So, for instance, most insects pull air directly into their bodies with a set of open tubes (called tracheae). Once the air makes it into those tubes oxygen will passively diffuse into the insect's tissues.
Big animals have a much bigger problem*. Not only do larger animals need much more oxygen to fuel their bodies, they also have to actively transport that Oxygen because the distances it is required to travel can't be achieved by passive diffusion. Lungs and gills are both organs dedicated to pumping more oxygen into animal bodies, and many animals use blood, and special proteins dissolved in blood, to move oxygen about.
In vertebrates the oxygen-carrying protein is called hemoglobin. Very simply, a hemoglobin molecule is a cage used to hold iron atoms in such a way that they will bind to an oxygen atom. The iron containing group in the hemoglobin protein (called heme) gives our blood its red colour and its hemoglobin circulating through that snail's body that makes it red.
As with every problem life faces, invertebrates have come up with many more interesting ways to move oxygen around than their spined relatives. Annelids (earthworms and their kin), brachiapods and spoon worms have a whole set of iron-containing proteins to do the job. Even more interestingly, molluscs and some arthropods have a protein that uses Copper rather than Iron atoms to co-ordinate an oxygen molecule. This molecule, called hemocyanin, takes on a green-ish blue hue when oxygen binds to it and changes its conformation.
Most snails get through life fine with hemocyanin as the only oxygen-carrying molecule in their blood, so why have Biomphalaria and their cousins become red-blooded? Part of the reasons lies in their lifestyle. Planorbid snails breath with lungs (which only work in air) but live underwater. If you make your living by holding your breath while diving then you really want to have some way of holding on to as much of the oxygen you get form each breath for as long as possible. It seems that Biomphalaria hemoglobin is more efficient at using the oxygen stored in lungs while diving than any hemocyanin could be.
It's all well talking about why an animal might have evolved a particular trait. But in evolutionary biology it's generally much more intresting to try and work out how. How does an air-breathing snail make its own hemoglobin from scratch? A team lead by Bernhard Lieb asked just that question a few years ago, and found the answer: Biomphalaria hemoglobin was made by cobbling together parts of existing proteins. When Lieb et al (2006, doi: 10.1073/pnas.0601861103) isolated hemoglobin from red-blooded snails they found it was made up of two different components (called peptides), each of which has 13 different sub-components (called domains). When the team compared the sequence of those peptides and their domains to other molluscan proteins they found similarties between the hemoglobin sequences and another iron-containing protein called myoglobin.
Myoglobin is a small molecule that is usually restricted to muscles where is acts as a store of Oxygen (in snails, myoglobin is most commonly found in the muscles that drive the radula, the rasp like organ used to break down food). The Biomphalaria hemoglobin sequences are more closely related to each other than they are to myoglobins from any other species. This pattern suggests the sequences that make up the snail hemoglobin descend from a single common ancestor. Subsequent changes to each of these descendants have allowed the descendants proteins to group together and become "super myoglobins" capable of transporting oxygen through the body.
*The huge number of ways size matters in biology were wonderfully explained by JBS Haldane. I'd reproduce the most famous passage here, but it's probably even better if you discover it by yourself.
Labels: sci-blogs, snails, sunday spinelessness
Sunday, June 3, 2012
Sunday Spinelessness - Nothing to see here
Labels: environment and ecology, phoning-it-in, photos, sci-blogs, sunday spinelessness
Sunday, May 27, 2012
Sunday Spinelessness - Even their eggs are spikey
A couple of weeks ago I made a little discovery. Some of these slugs also have eggs that are covered in papillae
Labels: environment and ecology, leaf veined slugs, photos, sci-blogs, science
Friday, May 25, 2012
Selling out to the mainstream media
They also asked me if I'd consider offering my on analysis of science in the news from time to time. Being of the opinion that its always better to do something about a problem rather than simply complain about it, I happily agreed. Here's the first piece to appear, a quick summary of the recent result that coffee isn't killing you and might even be prolonging your life.
I was prepared for a barrage of comments amounting "what does some evolutionary biologist/bug nerd know about medicine", but so far everyone that's taken the time to write something has been very supportive!
Labels: me elsewhere, sci-blogs, science and society, science communication, stuff
Sunday, May 20, 2012
Sunday Spinelessness - Lazy Link Blogging Edition
Let's start with Landcare Research (Manaaki Whenua), the Crown Research Institute that focuses on bioiversity and environmental issues. As you'd expect, Landcare do lots of work on invertebrates an that's refelected in their public face. Their "What is this bug?" site is a great starting point for anyone trying to put a name to some weird critter that's crawled out from the garden, and topic pages on some of our most interesting creatures (Onychophora, stick insects and our amazingly diverse moth fauna) make for a nice introduction to these groups.
The Landcare site I really want to pull out for special focus is their recently developed guide to freshwater invertebrates. Freshwater invertebrates are often use as "indicator species". Because certain groups of stream invertebrates are very susceptible to pollution or changes to a stream's natural flow, the presence or absence of these groups in particular stretch of water can give us an idea of the health of that water. In order to help community groups or landowner monitor their streams, Landcare has produced some beautiful photographs of stream invertebrates (along with information on how to sample them, and how well each species acts as an indicator). You really should check out the whole site, because some of them are quite beautiful, I'll just give you a taster here:
Left: Kempynus lacewing sporting some impressive 'tusks'. Right: Head shot of the larvae of an Onychohydrus diving beetle. Both images © Landcare Research
Phronima having recently evacuate its salp (© Owen Anderson). Tiny octopus! (photo from Ocean Survey 20/20)
Labels: phoning-it-in, photos, sci-blogs, sunday spinelessness